This collection houses publications generated by the faculty of the Department of Chemistry and Biochemistry.

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Submissions from 2019

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Analysis of Potential Cyanide Antidote, Dimethyl Trisulfide, in Whole Blood by Dynamic Headspace Gas Chromatography–mass Spectroscopy, Subrata Bhadra, Zhiling Zhang, Wenhui Zhou, Fredrick Ochieng, Gary A. Rockwood, Dennean Lippner, and Brian A. Logue

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Determination of Free Cyano-cobinamide in Swine and Rabbit Plasma by Liquid Chromatography Tandem Mass Spectrometry, Joseph K. Dzisam, Matthew Brenner, Sari B. Mahon, Gary A. Rockwood, and Brian A. Logue

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Metabolism of Cyanide by Glutathione To Produce the Novel Cyanide Metabolite 2-Aminothiazoline-4-oxoaminoethanoic Acid, Obed A. Gyamfi, Nesta Bortey-Sam, Sari B. Mahon, Matthew Brenner, and Gary A. Rockwood

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Antidotal Efficacies of the Cyanide Antidote Candidate Dimethyl Trisulfide Alone and in Combination with Cobinamide Derivatives, Ilona Petrikovics, Lorand Kiss, Ching-en Chou, Afshin Ebrahimpour, Kristof Kovacs, Marton Kiss, Brian Logue, Adriano Chan, Ananda B. W. Manage, Marianna Budai, Gerry R. Boss, and Gary A. Rockwood

Submissions from 2018

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A Comprehensive Analysis of Anion–Quadrupole Interactions in Protein Structures, Suvobrata Chakravarty, Adron R. Ung, Brian Moore, and Mona S. Alshamrani

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Interconnected ZrO2 Doped ZnO/TiO2 Network Photoanode for Dye-sensitized Solar Cells, Abdulmenan M. Hussein, Anastasiia V. Iefanova, Ranjit T. Koodali, Brian A. Logue, and Rajesh V. Shende

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Monitoring Dose Response of Cyanide Antidote Dimethyl Trisulfide in Rabbits Using Diffuse Optical Spectroscopy, Jangwoen Lee, Gary Rockwood, Brian A. Logue, Erica Manandhar, Ilona Petrikovics, CHanghoon Han, Vik Bebarta, Sari B. Mahon, Tanya Burney, and Matthew Brenner

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Percent Residual Accuracy for Quantifying Goodness-of-fit of Linear Calibration Curves, Brian A. Logue

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Determination of Methyl Isopropyl Hydantoin from Rat Erythrocytes by Gas-chromatography Mass-spectrometry to Determine Methyl Isocyanate Dose Following Inhalation Exposure, Brian A. Logue, Zhiling Zhang, Erica Manandhar, Adam L. Pay, Claire R. Croutch, Eric Peters, William Sonsa, jacqueline S. Rioux, Liva A. Veress, and Carl W. White

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Rapid and Low-Temperature Processing of Mesoporous and Nanocrystalline TiO2 Film Using Microwave Irradiation, Md Ataul Mamun, Ashraful Haider Chowdhury, Ke Chen, Rajesh Pathak, Qiquan Qiao, and Brian A. Logue

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Functionalized Carboxylate Deposition of Triphenylamine-based Organic Dyes for Efficient Dye-sensitized Solar Cells, Md Ataul Mamun, Qiquan Qiao, and Brian A. Logue

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Rapid Analysis of Sulfur Mustard Oxide in Plasma Using Gas Chromatography-chemical Ionization-mass Spectrometry for Diagnosis of Sulfur Mustard Exposure, Erica Manandhar, Adam Pay, Livia A. Veress, and Brian A. Logue

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Development of Novel Intramolecular FRET-Based ABC Transporter Biosensors to Identify New Substrates and Modulators, Bremansu Osa-Andrews, Kee W. Tan, Angelina Sampson, and Surtaj H. Iram

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Calcitriol and Calcipotriol Modulate Transport Activity of ABC Transporters and Exhibit Selective Cytotoxicity in MRP1-overexpressing Cells, Kee W. Tan, Angelina Sampson, Bremansu Osa-Andrews, and Surtaj H. Iram

Submissions from 2017

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The Analysis of Aroma/Flavor Compounds in Green Tea Using Ice Concentration Linked with Extractive Stirrer, Abdullah H. Alluhayb and Brian A. Logue

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Characteristics of a PHD Finger Subtype, Daniel Boamah, Tao Lin, Franchesca A. Poppinga, Shraddha Basu, Shahariar Rahman, Francisca Essel, and Suvobrata Chakravarty

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A Review of Rapid and Field-portable Analytical Techniques for the Diagnosis of Cyanide Exposure, Randy Jackson and Brian A. Logue

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Biophysical Approaches Facilitate Computational Drug Discovery for ATP-Binding Cassette Proteins, Steven V. Molinski, Zoltan Bozoky, Surtaj H. Iram, and Saumel Ahmadi

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General Chemistry Laboratory Experiment To Demonstrate Organic Synthesis, Fluorescence, and Chemiluminescence Through Production of a Biphasic Glow Stick, Adam L. Pay, Curtiss Kovash, and Brian A. Logue

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High-content Screening of Clinically Tested Anticancer Drugs Identifies Novel Inhibitors of Human MRP1 (ABCC1), Brian G. Perterson, Kee W. Tan, Bremansu Osa-Andrews, and Surtaj H. Iram

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Pharmacokinetics of Next Generation Cyanide Antidote Sulfanegen in Rabbits, Michael W. Stutelberg, Alexandre R. Monteil, Kumar G. Belani, Bryant Moeller, Harpreet Singh, Navneet Kaur, Simranjit S. Sra, David S. Beebe, Steven E. Patterson, and Brian A. Logue

Submissions from 2016

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Analysis of Nerve Agent Metabolites from Nail Clippings by Liquid Chromatography Tandem Mass Spectrometry, Amanda S. Appel and Brian A. Logue

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Analysis of Nerve Agent Metabolites from Hair for Long-Term Verification of Nerve Agent Exposure, Amanda S. Appel, John H. McDonough, Joseph D. McMonagle, and Brian A. Logue

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Functionalized Carboxylate Deposition for Rapid Sensitization of Dye-sensitized Solar Cells, Venkataiah Mallam, Sanjib Baral, Santosh Gyawali, Robert P. Oda, Hytham Elbohy, Jeevan Nepal, Qiquan Qiao, Madhi Farrokh Baroughi, and Brian A. Logue

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Determination of Dimethyl Trisulfide in Rabbit Blood Using Stir Bar Sorptive Extraction Gas Chromatography-mass Spectrometry, Erica Mananadhar, Nujud Maslamani, Ilona Petrikovics, Gary A. Rockwood, and Brian A. Logue

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ICE Concentration Linked with Extractive Stirrer (ICECLES), Nujud Maslamani, Erica Manandhar, Danielle K. Germia, and Brian A. Logue

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Development of Sulfanegen for Mass Cyanide Casualties, Steven E. Patterson, Bryant Moeller, Herbert T. Nagasawa, Robert Vince, Duane L. Crankshaw, Jacquie Briggs, Michael W. Stutelberg, Chakravarthy V. Vinnakota, and Brian A. Logue

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Simultaneous Determination of 3-mercaptopyruvate and Cobinamide in Plasma by Liquid Chromatography–tandem Mass Spectrometry, Michael W. Stutelberg, Joseph K. Dzisam, ALexandre R. Monteil, Ilona Petrikovics, Gerry R. Boss, Steven E. Patterson, Gary A. Rockwood, and Brian A. Logue

Submissions from 2015

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Histone Peptide Recognition by KDM5B-PHD1: A Case Study, Suvobrata Chakravarty, Francisca Essel, Tao Lin, and Stad Zeigler

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ATP-Binding Cassette Transporter Structure Changes Detected by Intramolecular Fluorescence Energy Transfer for High-Throughput Screening, Surtaj H. Iram, Simon J. Gruber, Olga N. Raguimova, David D. Thomas, and Seth L. Robia

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Quantitative Hands-on Gas Chromatography Undergraduate Analytical Laboratory Exercise, Joshua C. Kofford, Erica Manandhar, and Brian A. Logue

The Analysis of Cyanide in Biological Samples, Brian A. Logue and Brendan L. Mitchell

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Investigation of Novel Anthracene‐bridged Carbazoles as Sensitizers and Co‐sensitizers for Dye‐sensitized Solar Cells, Venkataiah Mallam, Hytham Elbohy, Qiquan Qiao, and Brian A. Logue

Submissions from 2014

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Simultaneous High-performance Liquid Chromatography-tandem Mass Spectrometry (HPLC-MS-MS) Analysis of Cyanide and Thiocyanate from Swine Plasma, Raj K. Bhandari, Erica Manandhar, Robert P. Oda, Gary A. Rockwood, and Brian A. Logue

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Cyanide Toxicokinetics: The Behavior of Cyanide, Thiocyanate and 2-Amino-2-Thiazoline-4-Carboxylic Acid in Multiple Animal Models, Raj K. Bhandari, Robert P. Oda, Ilona Petrikovics, David E. Thompson, Matthew Brenner, Sari B. Mahon, Vikhyat S. Bebarta, Gary A. Rockwood, and Brian A. Logue

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Transparent Platinum Counter Electrode for Efficient Semi-transparent Dye-sensitized Solar Cells, Anastasiia Iefanova, Jeevan Napal, Prashant Poudel, Daren Davoux, Umesh Gautam, Venkataiah Mallam, Qiquan Qiao, Brian A. Logue, and Madhi Farrokh Baroughi

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Differential functional rescue of Lys(513) and Lys(516) processing mutants of MRP1 (ABCC1) by chemical chaperones reveals different domain-domain interactions of the transporter, Surtaj H. Iram and Susan P. Cole

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Development of a Fluorescence-Based Sensor for Rapid Diagnosis of Cyanide Exposure, Randy Jackson, Robert P. Oda, Raj K. Bhandari, Sari B. Mahon, Matthew Brenner, Gary A. Rockwood, and Brian A. Logue

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Evaluation of Activated Carbon Respirator Filter Effectiveness by Concentration Mapping of Dimethyl Methylphosphonate, Brendan L. MItchell, Brit G. Billingsley, and Brian A. Logue

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Genomic and Evolutionary Characterization of a Novel Influenza-C-like Virus from Swine, Zizhang Sheng, Zhiguang Ran, Dan Wang, Adam Hoppe, Suvobrata Chakravarty, Ben Hause, and Feng Li

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Determination of 3-mercaptopyruvate in Plasma by High Performance Liquid Chromatography Tandem Mass Spectrometry, Michael W. Stutelberg, Chakravarthy V. Vinnakota, Brendan L. Mitchell, Alexandre R. Monteil, STeven E. Patterson, and Brian A. Logue

Submissions from 2013

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Isolation of a Novel Swine Influenza Virus from Oklahoma in 2011 Which Is Distantly Related to Human Influenza C Viruses, Ben Hause, Mariette Ducatez, Emily A. Collin, Zhiguang Ran, Runxia Liu, Zizhang Sheng, Anibal Armien, Bryan Kaplan, Suvobrata Chakravarty, Adam D. Hoppe, Richard J. Webby, Randy R. Simonson, and Feng Li

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Phenethylisothiocyanate Alters Site- and Promoter-Specific Histone Tail Modifications in Cancer Cells, Yi Liu, Suvobrata Chakravarty, and Moul Dey

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Toxicokinetic Profiles of α-ketoglutarate Cyanohydrin, a Cyanide Detoxification Product, Following Exposure to Potassium Cyanide, Brendan L. Mitchell, Raj K. Bhandari, Vikhyat S. Bebarta, Gary A. Rockwood, Gerry R. Boss, and Brian A. Logue

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Rapid Quantification of Dimethyl Methylphosphonate from Activated Carbon Particles by Static Headspace Gas Chromatography Mass Spectrometry, Brendan L. Mitchell, Brit G. Billingsley, and Brian A. Logue

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Quantification of α-ketoglutarate cyanohydrin in Swine Plasma by Ultra-high Performance Liquid Chromatography Tandem Mass Spectrometry, Brendan L. Mitchell, Gary A. Rockwood, and Brian A. Logue

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Structural, Antigenic, and Evolutionary Characterizations of the Envelope Protein of Newly Emerging Duck Tembusu Virus, Kexoang Yu, Zhi-Zhang Sheng, Bing Huang, Xiuli Ma, Yufeng Li, Xiaoyuam Yuan, Zhuoming Qin, Dan Wang, Suvobrata Chakravarty, Feng Li, Minxun Song, and Huaichang Sun

Submissions from 2012

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Simultaneous Determination of Cyanide and Thiocyanate in Plasma by Chemical Ionization Gas Chromatography Mass-spectrometry (CI-GC-MS), Raj K. Bhandari, Robert P. Oda, Stephanie L. Youso, Ilona Petrikovics, Vikhyat S. Bebarta, Gary A. Rockwood, and Brian A. Logue

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“η6”‐Type anion–π in Biomolecular Recognition, Suvobrata Chakravarty, Zi-Zheng Sheng, Bradley Iverson, and Brian Moore

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Migration of the Swine Influenza Virus -δ Cluster Hemagglutinin NLinked Glycosylation Site from N142 to N144 Results in Loss of Antibody Cross-Reactivity, Ben Hause, Douglas L. Stine, Zizhang Sheng, Zhao Wang, Suvobrata Chakravarty, Randy R. Simonson, and Feng Li

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Mutation of Glu521 or Glu535 in Cytoplasmic Loop 5 Causes Differential Misfolding in Multiple Domains of Multidrug and Organic Anion Transporter MRP1 (ABCC1)., Surtaj H. Iram and Susan P. Cole

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TiO2 Compact Layers Prepared by Low Temperature Colloidal Synthesis and Deposition for High Performance Dye-sensitized Solar Cells, Curtiss S. Kovash, james D. Hoefelmeyer, and Brian A. Logue

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Plasma Persistence of 2-Aminothiazoline-4-Carboxylic Acid in Rat System Determined by Liquid Chromatography Tandem Mass Spectrometry, Ilona Petrikovics, Jorn C.C. Yu, David E. Thompson, Prashanth Jayanna, Brian A. Logue, Jessica Nasr, Raj K. Bhandari, Steven I. Baskin, and Gary Rockwood

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Comparison of Cyanide Exposure Markers in the Biofluids of Smokers and Non-smokers, Chakravarthy V. Vinnakota, Naga S. Peetha, Mitch G. Perrizo, David G. Ferris, Robert P. Oda, Gary A. Rockwood, and Brian A. Logue

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The Analysis of Protein-Bound Thiocyanate in Plasma of Smokers and Non-Smokers as a Marker of Cyanide Exposure, Stephanie L. Youso, Gary A. Rockwood, and Brian A. Logue

Submissions from 2011

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Systematic Assessment of Accuracy of Comparative Model of Proteins Belonging to Different Structural Fold Classes, Suvobrata Chakravarty, Dario Ghersi, and Roberto Sanchez

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Nuclear Localization of Influenza B Polymerase Proteins and Their Binary Complexes, Qiji Deng, Dan Wang, Xiaoxiao Xiang, Xiaofei Gao, Philip R. Hardwidge, Radhey S. Kaushik, Thorston Wolff, Suvobrata Chakravarty, and Feng Li

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Application of a Split Luciferase Complementation Assay for theDetection of Viral Protein-Protein Interactions, Qiji Deng, Dan Wang, Xiaoxiao Xiang, Philip R. Hardwidge, Radhey S. Kaushik, Thorsten Wolff, Suvobrata Chakravarty, and Feng Li

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Expression and Function of Human MRP1 (ABCC1) is Dependent on Amino Acids in Cytoplasmic Loop 5 and its Interface with Nucleotide Binding Domain 2, Surtaj H. Iram and Susan P.C. Cole

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A Single Polymorphism in HIV-1 Subtype C SP1 Is Sufficient To Confer Natural Resistance to the Maturation Inhibitor Bevirimat, Wuxun Lu, Karl Salzwedel, Dan Wang, Suvobrata Chakravarty, Eric O. Freed, Carl T. Wild, and Feng Li

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Organ-distribution of the Metabolite 2-Aminothiazoline-4-Carboxylic Acid in a Rat Model following Cyanide Exposure, Ilona Petrikovics, David E. Thompson, Gary A. Rockwood, and Brian A. Logue

Submissions from 2010

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The Analysis of Cyanide and its Breakdown Products in Biological Samples, Brian A. Logue, Diane M. Hinkens, Steven I. Baskin, and Gary A. Rockwood

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A Laboratory Exercise To Demonstrate the Theory and Practice of Analytical Sampling, Brian A. Logue and Stephanie L. Youso

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Determination of Cyanide Exposure by Gas Chromatography–mass Spectrometry Analysis of Cyanide-exposed Plasma Proteins, Stephanie L. Youso, Gary A. Rockwood, John A. Lee, and Brian A. Logue

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Biochemical Profiling of Histone Binding Selectivity of the Yeast Bromodomain Family, Qiang Zhang, Suvobrata Chakravarty, Dario Ghersi, Lei Zeng, Alaxander N. Plotnikov, Roberto Sanchez, and Ming-Ming Zhou

Submissions from 2009

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Structure and Site-Specific Recognition of Histone H3 by the PHD Finger of Human Autoimmune Regulator, Suvobrata Chakravarty, Lei Zeng, and Ming-Ming Zhou

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The Analysis of 2-Amino-2-Thiazoline-4-Carboxylic Acid in the Plasma of Smokers and Non-smokers, Brian A. Logue, Wendy K. Maserek, Gary A. Rockwood, Michael W. Keebaugh, and Steven I. Baskin

Submissions from 2008

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Systematic analysis of the effect of multiple Templates on the Accuracy of Comparative Models of Protein Structure, Suvobrata Chakravarty, Sucheta Godbole, Bing Zhang, Seth Berger, and Roberto Sanchez

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The Analysis of Cyanide and its Metabolites in Biological Samples, Brian A. Logue and Diane M. Hinkens

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Roles of the Glycogen-binding Domain and Snf4 in Glucose Inhibition of SNF1 Protein Kinase, MIlica Momcilovic, Surtaj H. Iram, Yang Liu, and Marian Carlson

Submissions from 2007

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Enzyme-based Intravascular Defense Against Organophosphorus Neurotoxins: Synergism of Dendritic-enzyme Complexes with 2-PAM and Atropine, I. Petrikovics, M. E. Wales, J. C. Jaszberenyi, M. I. Budai, S. I. Baskin, M. Szilasi, B. A. Logue, Patricia Chapela, and J. R. Wild

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Structure of the Bateman2 Domain of Yeast Snf4: Dimeric Association and Relevance for AMP Binding, Michael J. Rudolph, Gabriele A. Amodeo, Surtaj H. Iram, Seung-Pyo Hong, Giorgia Pirino, Marian Carlson, and Liang Tong

Submissions from 2006

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Spectrophotometric Analysis of the Cyanide Metabolite 2-Aminothiazoline-4-Carboxylic Acid (ATCA), Steven I. Baskin, Ilona Petrikovics, Gennady E. Platoff, Gary A. Rockwood, and Brian A. Logue

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The Beta-oxidation Systems of Escherichia coli and Salmonella enterica are Not Functionally Equivalent, Surtaj H. Iram and John E. Cronan

Submissions from 2005

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Accuracy of Structure-derived Properties in Simple Comparative Models of Protein Structures, Suvobrata Chakravarty, Lei Wang, and Roberto Sanchez

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Unexpected Functional Diversity Among FadR Fatty Acid Transcriptional Regulatory Proteins, Surtaj H. Iram and John E. Cronan

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Determination of the Cyanide Metabolite 2-Aminothiazoline-4-Carboxylic Acid in Urine and Plasma by Gas Chromatography–mass Spectrometry, Brian A. Logue; Nicholas P. Kirschten; Ilona Petrikovics; Matthew A, Moser; Gary A. Rockwood; and Steven I. Baskin

Submissions from 2004

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Systematic Analysis of Added-Value in Simple Comparative Models of Protein Structure, Suvobrata Chakravarty and Roberto Sanchez

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Role of Surface Alteration in Determining the Mobility of U(VI) in the Presence of Citrate:  Implications for Extraction of U(VI) from Soils, Brian A. Logue

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U(VI) Adsorption on Natural Iron-coated Sands: Comparison of Approaches for Modeling Adsorption on Heterogeneous Environmental Materials, Brian A. Logue, Robert W. Smith, and John C. Westall

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Article Navigation Comparing Therapeutic and Prophylactic Protection against the Lethal Effect of Paraoxon, I. Petrikovics, D. Papahadjopoulos, K. Hong, T-C Cheng, S. I. Baskin, J. Jiang, J. C. Jaszberenyi, B. A. Logue, M. Szilasi, W. D. McGuinn, and J. L. Way

Submissions from 2003

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Kinetics of Reduction of Nitrobenzene and Carbon Tetrachloride at an Iron-Oxide Coated Gold Electrode, Brian A. Logue and John C. Westall

Submissions from 2002

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A Procedure for Detection and Quantitation of Cavity Volumes in Proteins, Suvobrata Chakravarty, Akshay Bhinge, and Raghavan Varadarajan

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Elucidation of Factors Responsible for Enhanced Thermal Stability of Proteins:  A Structural Genomics Based Study, Suvobrata Chakravarty and Raghavan Varadarajan

Submissions from 2000

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Protein Stabilization Through Phage Display, Suvobrata Chakravarty, Nivedita Mitra, Iris Queitsch, Avadhesha Surolia, Raghavan Varadarajan, and Stefen Dubel

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Elucidation of Determinants of Protein Stability Through Genome Sequence Analysis, Suvobrata Chakravarty and Raghavan Varadarajan

Submissions from 1997

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A Method for the High Performance Gel Filtration Chromatography Characterization of Inorganic Colloids, Brian A. Logue, Carolyn Burns, and James A. Rice

Submissions from 199

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Investigation of the Photochemistry and Photophysics of Para-substituted Tertiary Thiocinnamamides, Jeffery E. Elbert and Brian A. Logue