Off-campus South Dakota State University users: To download campus access theses, please use the following link to log into our proxy server with your South Dakota State University ID and password.
Non-South Dakota State University users: Please talk to your librarian about requesting this thesis through interlibrary loan.
Thesis - University Access Only
Master of Science (MS)
Department / School
Biology and Microbiology
Madhav P. Nepal
Plants are constantly challenged by a diverse array of rapidly evolving pathogens that stimulate evolution of host defense molecules encoded by disease resistance genes (Rgenes). The main objectives of this research were to 1) identify CNL (Coiled coil Nucleotide binding site Leucine rich region) group of R-genes in soybean, 2) elucidate evolutionary divergence of Soybean CNL orthologs across the genomes of six plant species (Arabidopsis, Glycine, Medicago, Phaseolus, Poplar and rice), and 3) elucidate distribution and diversity of Cis-acting Regulatory Elements (CREs) across the six plant genomes. In order to achieve these objectives, approaches in bioinformatics and phylogenetics were used. The 188 soybean CNL genes, identified in this study, were nested into four clades consistent to their orthologs in Arabidopsis. The soybean CNL genes occurred in 42 CNL gene-clusters located on 13 different chromosomes. Analysis of selection pressure and chromosomal positioning suggested rapid evolution of the Rgenes through increased recombination rates. Analysis of six plant genomes yielded over 900 CNL R-genes which were also nested into four clades suggesting the presence of slowly evolving Type-I R genes. The crown groups contained abundant well-supported homogeneous subclades revealing the dominance of Type-II R-genes. Arabidopsis Orthologs of CNL-A and CNL-D were absent from rice genome suggesting a unique retention rate of the CNL genes in monocot. Analysis of Core regulatory elements (CREs) showed eight CREs were present in all genomes. The result that only monocot included had significantly lower CREs needs further analysis by including additional monocot genomes.
Library of Congress Subject Headings
Soybean -- Disease and pest resistance -- Genetic aspects
Plants -- Disease and pest resistance -- Genetic aspects
Includes bibliographical references (pages 114-115)
Number of Pages
South Dakota State University
In Copyright - Non-Commercial Use Permitted
Benson, Benjamin V., "Disease Resistance Genes and Their Evolutionary History in Six Plant Species" (2014). Electronic Theses and Dissertations. 1988.