Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange

Title

Comparison of Three Assembly Strategies for a Heterozygous Grapevine Genome Assembly

Authors

Sagar Patel, South Dakota State UniversityFollow
Erliang Zeng, University of South DakotaFollow
Zhixiu Lu, University of South Dakota
Xiaozhu Jin, South Dakota State University
Padmapriya Swaminathan, South Dakota State UniversityFollow
Anne Fennell, South Dakota State UniversityFollow

Document Type

Data set

Publication Date

1-2018

Description

Each folder includes the following files.

1. Assembly.fa: Genome assembly in scaffolds.
2. Blast2GO_results.b2g: The full annotation of coding sequences.
3. Coding_sequences.fa: The predicted coding sequences from masked assembly.
4. Gene_models.gff: Gene predictions from masked assembly.
5. Masked_assembly.fa: The masked genome assembly.
6. Protein.fa: The predicted protein sequences.

PLAT*_GC contains chromosomal assembly and annotation as "pseudo_chromosomal_assembly" folder.

SnpEff folder contains results from SnpEff as SnpEff_summary, genes affected are described as vini_snp.txt.genes and vini_snpeff is output from SnpEff.

File Format(s)

FASTA format

Rights

Copyright 2018 © the Author(s)

Comments

The downloadable Zip file containing all data sets and files is 1.4 GB.

Recommended Citation

Patel, Sagar; Lu, Zhixiu; Jin, Xiaozhu; Swaminathan, Padmapriya; Zeng, Erliang and Fennell, Anne, "Comparison of Three Assembly Strategies for a Heterozygous Grapevine Genome Assembly" (2018). Comparison of Three Assembly Strategies for a Heterozygous Grapevine Genome Assembly. 1.