Session 7: Methods - Shiny App as a Solution for Streamlining Complex

Xijin Ge, South Dakota State University

Presentation Type

Event

Abstract

Rapid innovation in biotechnology, especially DNA sequencing, holds great promise for revolutionizing medicine. The main bottleneck is how to analyze and interpret the massive amount of data effectively. Many stand-alone software packages exists, mostly as R packages. We developed iDEP(Integrated Differential Expression and Pathway analysis), a large Shiny application that integrates hundreds of R packages, and large gene annotation database. Available at (http://ge-lab.org/idep/), iDEP streamlines complex bioinformatics pipelines as a friendly web interface, that can turn data into biological insights within minutes, instead of months.

Start Date

2-12-2018 2:00 PM

End Date

2-12-2018 3:00 PM

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Feb 12th, 2:00 PM Feb 12th, 3:00 PM

Session 7: Methods - Shiny App as a Solution for Streamlining Complex

University Student Union: Dakota Room 250 A/C

Rapid innovation in biotechnology, especially DNA sequencing, holds great promise for revolutionizing medicine. The main bottleneck is how to analyze and interpret the massive amount of data effectively. Many stand-alone software packages exists, mostly as R packages. We developed iDEP(Integrated Differential Expression and Pathway analysis), a large Shiny application that integrates hundreds of R packages, and large gene annotation database. Available at (http://ge-lab.org/idep/), iDEP streamlines complex bioinformatics pipelines as a friendly web interface, that can turn data into biological insights within minutes, instead of months.