Document Type
Data set
Publication Date
12-2019
Abstract
This data set contains the following files:
- Assembly.fa: Genome assembly in scaffolds.
- Blast2GO_results.b2g: The full annotation of coding sequences.
- Coding_sequences.fa: The predicted coding sequences from masked assembly.
- Gene_models.gff: Gene predictions from masked assembly.
- Masked_assembly.fa: The masked genome assembly.
- Protein.fa: The predicted protein sequences
The downloadable Zip file containing all data sets and files is 647 MB.
Publication Title
Horticulture Research
Volume
7
Issue
9
DOI of Published Version
10.1038/s41438-020-0316-2
Publisher
Nature Springer
Rights
Copyright 2019 © the Author(s)
Recommended Citation
Patel, S., Robben, M., Fennell, A. et al. Draft genome of the Native American cold hardy grapevine Vitis riparia Michx. ‘Manitoba 37’. Hortic Res 7, 92 (2020). https://doi.org/10.1038/s41438-020-0316-2
588271VVout.fasta (52930 kB)
Transcriptome forV. riparia PI588271 : Transcriptome was assembled from 100 bp paired end Illumina reads from dormant buds, root, tendril, flower, rachis, and leaf tissues.
588259VVout.fasta (107933 kB)
Transcriptome for V. riparia PI588259 : Transcriptome was assembled from 100 bp paired end Illumina reads from dormant buds, root, tendril, flower, rachis, green berry, ripe berry and leaf tissues.
588587VVout.fasta (67747 kB)
Transcriptome for V. riparia PI588587 : Transcriptome was assembled from 100 bp paired end Illumina reads from dormant buds, root, tendril, flower, rachis, green berry, ripe berry and leaf tissues.
Transcriptome forV. riparia PI588271 : Transcriptome was assembled from 100 bp paired end Illumina reads from dormant buds, root, tendril, flower, rachis, and leaf tissues.
588259VVout.fasta (107933 kB)
Transcriptome for V. riparia PI588259 : Transcriptome was assembled from 100 bp paired end Illumina reads from dormant buds, root, tendril, flower, rachis, green berry, ripe berry and leaf tissues.
588587VVout.fasta (67747 kB)
Transcriptome for V. riparia PI588587 : Transcriptome was assembled from 100 bp paired end Illumina reads from dormant buds, root, tendril, flower, rachis, green berry, ripe berry and leaf tissues.
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