This collection houses articles and publications generated by the faculty of the Department of Agronomy, Horticulture and Plant Science

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Submissions from 2017

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Calculating Soil Organic Turnover at Different Landscape Position in Precision Conservation, David E. Clay, Jiyul Chang, Graig Reicks, Sharon A. Clay, and Cheryl L. Reese

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From Plows, Horses, and Harnesses to Precision Technologies in the North American Great Plains, David E. Clay, Sharon A. Clay, Thomas DeSutter, and Cheryl Reese

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An Introduction to Experimental Design and Models, David Clay, Gary Hatfield, and Sharon A. Clay

Site-specific Weed Management, Sharon A. Clay and Stephanie A. Bruggeman

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Estimating Weed and Insect Development, In-Season Yield Losses, and Economic Thresholds, Sharon A. Clay and Adam Varenhorst

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First Report of Alternaria Black Spot caused by Alternaria alternata on Brassica carinata in South Dakota, M. Dunbar, A. Adhikari, B. Kontz, A. Varenhorst, T. Nlleya, E. Byamukama, and F. Mathew

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Propelled Abrasive Grit Applications for Weed Management in Transitional Corn Grain Production, Mauricio Enzo-Barradas, Claire N. Friedrichsen, Frank Forcella, Dan Humberg, and Sharon A. Clay

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Growth and Development of Two Perennial Grasses in Ambient Light Conditions during their Natural Dormant Period, Jia Guo, Arvid Boe, Do-Soon Kim, and D. K. Lee

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Biomass Yield and Feedstock Quality of Prairie Cordgrass in Response to Seeding Rate, Row Spacing, and Nitrogen Fertilization, Jia Guo, Santanu Thapa, Thomas Voigt, Vance Owens, Arvid Boe, and D. K. Lee

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A Public–Industry Partnership for Enhancing Corn Nitrogen Research and Datasets: Project Description, Methodology, and Outcomes, Newell R. Kitchen, John F. Shanahan, Curtis J. Ransom, Christopher J. Bandura, Gregory M. Bean, James J. Camberato, Paul R. Carter, Jason D. Clark, Richard B. Ferguson, Fabian G. Fernandez, David W. Franzen, Carrie A.M. Laboski, Emerson D. Nafziger, Zhisheng Qing, John E. Sawyer, and Matt Shafer

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Relationships Between Ear-Leaf Nutrient Concentrations at Silking and Corn Biomass and Grain Yields at Maturity, Peter Kovacs and Tony J. Vyn

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Enhanced Atrazine Degradation is Widespread Across the United States, Thomas C. Mueller, Ethan T. Parker, Larry Steckel, Sharon A. Clay, Michael DK Owen, William S. Curran, Randall Currie, Robert Scott, Christy Sprague, Daniel O. Stephenson, Donnie K. Miller, Eric P. Prostko, W. James Grichar, James Martin, L. Jason Kruz, Kevin Bradley, Mark L. Bernards, Peter Dotray, Stevan Knezevic, Vince Davis, and Robert Klein

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First Report of Diaporthe stewartii Causing Phomopsis Stem Canker of Sunflower (Helianthus annuus) in Minnesota, T. R. Olson, B. Krontz, S. G. Markell, T. J. Gulya, and F. M. Mathew

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Nutrient Partitioning and Stoichiometry in Soybean: A Synthesis-Analysis, S. Tamagno, G. R. Balboa, Y. Assefa, Peter Kovacs, S. N. Casteel, F. Salvagiotti, F. O. Garcia, W. M. Stewart, and I. A. Ciampitti

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QUBIC: A Bioconductor Package for Qualitative Biclustering Analysis of Gene co-Expression Data, Yu Zhang, Juan Xie, JInyu Yang, Anne Fennell Dr, Chi Zhang, and Qin Ma

Submissions from 2016

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Towards an Open Grapevine Information System, A-F Adam-Blondon, M. Alaux, C. Pommier, D. Cantu, Z-M Cheng, GR Cramer, C. Davies, S. Delrot, L. Deluc, G. Di Gaspero, J. Grimplet, A. Fennell Dr, and Et. al

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Corn Yield Loss Due to Volunteer Soybean, Jill Alms, Sharon A. Clay, David Vos, and Michael Moechnig

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Yield Loss and Management of Volunteer Corn in Soybean, Jill Alms, Michael Moechnig, David Vos, and Sharon Clay

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Physiological and Molecular Characterisation of Lucerne (Medicago sativa L.) Germplasm with Improved Seedling Freezing Tolerance, M. Rokebul Anowar, Anne Fennell, Arvid Boe, Ivan W. Mott, Michael D. Peel, and Yajun Wu

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First Detection of Aster Yellows Associated With Phytoplasma on Camelina sativa in South Dakota, E. Byamukama, C. Tande, J. Olson, L. Hesler, K. Grady, T. Nleya, and Febina Mathew

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Biochar Reduced Nitrous Oxide and Carbon Dioxide Emissions from Soil with Different Water and Temperature Cycles, Jiyul Chang, David E. Clay, Sharon A. Clay, Rajesh Chintala, Janet M. Miller, and Thomas Schumacher

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Estimating Annual Root Decomposition in Grassland Systems, Jiyul Chang, David E. Clay, Alexander Smart, and Sharon A. Clay

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Maize, Switchgrass, and Ponderosa Pine Biochar Added to Soil Increased Herbicide Sorption and Decreased Herbicide Efficacy, Sharon A. Clay, Kaitlynn K. Krack, Stephanie A. Bruggeman, Sharon Papiernik, and Thomas E. Schumacher

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Toward the Elucidation of Cytoplasmic Diversity in North American Grape Breeding Programs, Jonathan Fresnedo-Ramirez, Qi Sun, Chin-Feng Hwang, Craig A. Ledbetter, David W. Ramming, Anne Fennell, M. Andrew Walker, James J. Luby, Matthew D. Clark, Jason P. Londo, lance Cadle-Davidson, and Gan-Yuan Zhong

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Understanding and Identifying Variability, Newell R. Kitchen and Sharon A. Clay

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Optimization and Application of a Quantitative Polymerase Chain Reaction Assay to Detect Diaporthe Species in Soybean Plant Tissue, Brian Kontz, Sajag Adhikari, Senthil Subramanian, and Febina M. Mathew

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An Integrative and Applicable Phylogenetic Footprinting Framework for cis-regulatory Motifs Identification in Prokaryotic Genomes, Bingqiang Liu, Hanyuan Zhang, Chaun Zhou, Guojaun Li, Anne Fennell, Guanghui Wang, Yu Kang, and Qi Liu

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Next Generation Mapping of Enological Traits in an F2 Interspecific Grapevine Hybrid Family, Shanshan Yang, Jonathan Fresnedo-Ramírez, Qi Sun, David C. Manns, Gavin L. Sacks, Anna Katherine Mansfield, James L. Luby, Jason Londo, Bruce I. Reisch, lance Cadle-Davidson, and Anne Y. Fennell

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A Next-generation Marker Genotyping Platform (AmpSeq) in Heterozygous Crops: A Case Study for Marker-assisted Selection in Grapevine, SHanshan Yang, Jonathan Fresnedo-Ramírez, Minghui Wang, Linda Cote, Peter Schweitzer, Paola Barba, Elizabeth M. Takacs, Matthew Clark, James Luby, David C. Manns, Gavin Sacks, Anna Katharine Mansfield, Jason Londo, Anne Fennell Dr, David Gadoury, Bruce Reisch, Lance Cadle-Davidson, and Qi Sun

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Strategic Use of Native Species on Environmental Gradients Increases Diversity and Biomass Relative to Switchgrass Monocultures, Cody J. Zilverberg, Kwan Teoh, Arvid Boe, W. Carter Johnson, and Vance Owens

Submissions from 2015

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Differential Response of Teosinte and Flint, Sweet, Dent Corn Varieties to Weed Competition, S. A. Bruggeman, S. A. Clay, D. A. Horvath, and S. Flint-Garcia

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Identification and Characterization of Fusarium spp. Associated with Root Rots of Field Pea in North Dakota, Kishore Chittem, Febina Mathew, Matthew Gregoire, Ropbin S. Lamppa, Yen Wei Chang, Samuel G. Markell, Carl A. Bradley, Tharcisse Barasubiye, and Rubella S. Goswami

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Tillage and Corn Residue Harvesting Impact Surface and Subsurface Carbon Sequestration, David E. Clay, Graig Reicks, Janet Moriles Miller, C. Gregg Carlson, James. J. Stone, and Sharon Clay

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Pliable Plants, Sharon Clay

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Short Day Transcriptomic Programming During Induction of Dormancy in Grapevine, Anne Fennell, Karen A. Schlauch, Satyanarayana Gouthu, Laurent G. Deluc, Vedbar Khadka, Lekha Sreekantan, Jerome Grimplet, Grant C. Cramer, and Katherine L. Mathiason

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Protein Identification and Quantification from Riverbank Grape, Vitis riparia: Comparing SDS‐PAGE and FASP‐GPF Techniques for Shotgun Proteomic Analysis, Ingra S. George, Anne Y. Fennell, and Paul A. Haynes

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Phenotypic and Biomass Yield Variations in Natural Populations of Prairie Cordgrass (Spartina pectinata Link) in the USA, Jia Guo, Santanu Thapa, Thomas Voigt, A. Lane Rayburn, Arvid Boe, and D. K. Lee

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First report of an Orobanche ludoviciana Parasitizing Sunflowers, Robert M. Harveson, Allen Nelson, Febina M. Mathew, and Gerald J. Seiler

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RNAseq reveals weed-induced PIF3-like as a Candidate Target to Manipulate Weed Stress Response in Soybean, David P. Horvath, Stephanie A. Bruggeman, Janet Moriles Miller, Ronald Pierik, Chanhui Yan, David E. Clay, Brian Scheffler, and Sharon A. Clay

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An Economic Analysis of High-Intensity, Short-duration Grazing Systems in South Dakota and Nebraska, Larry Janssen, Bronc McMurtry, Matthew Stockton, Alexander Smart, and Sharon A. Clay

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Anhydrous Ammonia Timing and Rate Effects on Maize Nitrogen Use Efficiencies, Peter Kovacs, George E. Van Scoyoc, Thomas A. Doerge, James J. Camberato, and Tony J. Vyn

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Identification of Diaporthe longicolla on Dry Edible Peas, Dry Edible Beans and Soybeans in North Dakota, Febina Mathew, Lisa A. Castlebury, Kholoud Alananbeh, James G. Jordahl, Chris A. Taylor, Scott M. Meyer, Robin S. Lamppa, Julie A. pasche, and Samuel G. Markell

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Phomopsis Stem Canker: A Reemerging Threat to Sunflower (Helianthus annuus) in the United States, Febina M. Mathew, Kholoud M. Alananbeh, James G. Jordahl, Scott M. Meyer, Lisa A. Castlebury, Thomas J. Gulya, and Samuel G. Markell

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Rhizopus oryzae Associated with Melanagromyza splendida and Stem Disease of Sunflowers (Helianthus annuus) in California, Febina M. Mathew, Jarrad R. Prasifka, Stephen D. Galmari, Li Shi, Samuel G. Markell, and Thomas J. Gulya

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First Report of Phomopsis Stem Canker of Sunflower (Helianthus annuus) Caused by Diaporthe gulyae in Canada, Febina Mathew, K. Y. Rashid, T. J. Gulya, and S. G. Markell

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First Report of Brown Stem Rot of Soybean (Glycine max) Caused by Phialophora gregata in South Dakota, Febina Mathew, C. Tande, A. Gebreil, E. Byamukama, L. Osborne, and M. Draper

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Surface Temperatures and Durations Associated with Spring Prescribed Fires in Eastern South Dakota Tallgrass Prairies, Michelle K. Ohrtman, Sharon A. Clay, and Alexander J. Smart

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Association of Diaporthe longicolla with Black Zone Lines on Mature Soybean Plants, Taylor R. Olson, Ahmed Gebreil, Ana Micijevic, Carl A. Bradley, Kiersten A. Wise, Daren S. Mueller, Martin I. Chilvers, and Febina Mathew

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Tillage and Nitrogen Rate Effects on Area- and Yield-Scaled Nitrous Oxide Emissions From Pre-Plant Anhydrous Ammonia, Rex A. Omonode, Peter Kovacs, and Tony J. Vyn

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De novo Genome Assembly Tool Comparison for Highly Heterozygous Species Vitis vinifera cv. Sultanina, Sagar Patel, Padmapriya Swaminathan, Anne Fennell, and Erilang Zeng

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Does the U.S. Cropland Data Layer Provide an Accurate Benchmark for Land-Use Change Estimates?, Kurtis D. Reitsma, David E. Clay, Sharon A. Clay, Barry H. Dunn, and C. Reese

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Land-Use Change Impact on Soil Sustainability in a Climate and Vegetation Transition Zone, Kurtis D. Reitsma, Barry H. Dunn, Umakant Mishra, Sharon A. Clay, T. DeSutter, and David E. Clay

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Differential Effects of Biochar on Soils Within an Eroded Field, Thomas E. Schumacher, Rajesh Chintala, Saroopp Sandhu, Sandeep Kumar, David Clay, Ron Gelderman, Sharon Papiernik, Douglas Malo, Sharon Clay, and Jim Julson

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First Report of Charcoal Rot Caused by Macrophomina phaseolina on Brassica carinata in South Dakota, C. Tande, A. Gebreil, F. Mathew, and E. Byamukama

Submissions from 2014

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Corn Yield Is Not Reduced by Mid-Season Establishment of Cover Crops in Northern Great Plains Environments, Alex D. Bich, Cheryl L. Reese, Ann C. Kennedy, David E. Clay, and Sharon A. Clay

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Water Stress Impacts on Transgenic Drought-Tolerant Corn in the Northern Great Plains, Jiyul Chang, David E. Clay, Stephanie A. Hansen, Sharon A. Clay, and Thomas E. Schumacher

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Phosphorus Sorption and Availability fromBiochars and Soil/Biochar Mixtures, Rajesh Chintala, Thomas E. Schumacher, Louis M. McDonald, David E. Clay, Douglas D. Malo, Sharon K. Papiemik, Sharon A. Clay, and James L. Julson

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Does the Conversion of Grasslands to Row Crop Production in Semi-aridareas Threaten Global Food Supplies, David E. Clay, Sharon A. Clay, Kurtis D. Reitsma, Barry H. Dunn, Alexander J. Smart, Gregg G. Carlson, David Horvath, and James J. Stone

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Know Your Community: Weedy and Invasive Species, Sharon Clay

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Common Sunflower Seedling Emergence across the U.S. Midwest, Sharon A. Clay, Adam Davis, Anita Dille, John Lindquist, Analiza H. M. Ramirez, Christy Sprague, Graig Reicks, and Frank Forcella

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DIGE substantially reduces protein spot variability caused by 2D-PAGE and increases detection of differentially expressed proteins., G.R. Cramer, L. G. Deluc, K. Spreeman, K. Schegg, and A. Fennell

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Genomics and Functional Genomics of Winter Low Temperature Tolerance in Temperate Fruit Crops, Anne Fennell

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Identification of Differential Agronomic Traits in Early Stage Teosinte, Flint, Dent, and Sugar (Sweet) Corn Varieties in Competition with Weeds, S.A. Hansen, S. A. Clay, David Horvath, and S. Flint-Garcia

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First Report of Bacterial Pustule on Soybeans in North Dakota, Erik C. Heitkamp, Robin S. Lamppa, Patricia A. Lambrecht, Robert M. Harveson, Samuel G. Markell, and Febina Mathew

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Pre-Plant Anhydrous Ammonia Placement Consequences on No-Till Versus Conventional-Till Maize Growth and Nitrogen Responses, Peter Kovacs, George E. Van Scoyoc, Thomas A. Doerge, James J. Camberato, and Tony J. Vyn

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Full-Season Retrospectives on Causes of Plant-to-Plant Variability in Maize Grain Yield Response to Nitrogen and Tillage, Peter Kovacs and Tony J. Vyn

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Imapct of Biochar Application on Soil Properties and Herbacide Sorption, Kaitlyn Krack, Sharon A. Clay, David E. Clay, and Thomas E. Schumacher

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Impact of Herbicide Tolerant Crops on Soil Health and Sustainable Agriculture Crop Production, Sanghun Lee, David E. Clay, and Sharon A. Clay

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An Affinity–Effect Relationship for Microbial Communities in Plant–Soil Feedback Loops, Yi Lou, Sharon A. Clay, Adam S. Davis, Anita Dille, Joel Felix, Analiza H. M. Ramirez, Christy L. Sparague, and Anthony C. Yannarell

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Mob Grazing as a Method of Weed Control in South Dakota, Heidi Myer, Sharon Clay, and Alexander Smart

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Effectiveness of Control Treatments on Young Saitcedar (Tamarix spp.) Plants, Michelle K. Ohrtman, Sharon A. Clay, Shauna Waughtel, and Janet Moriles Miller

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Winter Wheat Quality Responses to Water, Environment, and Nitrogen Fertilization, Hyejin Park, David E. Clay, R. G. Hall, Tulsi P. Kharel, Sharon A. Clay, and Sanghun Lee

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Winter Cover Crops Impact on Corn Production in Semiarid Regions, Cheryl L. Reese, David E. Clay, Sharon A. Clay, Alex D. Birch, Ann C. Kennedy, Stephanie A. Hansen, and Janet Moriles

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Estimated South Dakota Land Use Change from 2006 to 2012, Kurtis D. Reitsma, David E. Clay, C. Gregg Carlson, Barry H. Dunn, Alexander J. Smart, David L. Wright, and Sharon A. Clay

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Growing Spartina pectinata in Previously Farmed Prairie Wetlands for Economic and Ecological Benefits, Cody J. Zilverberg, W. Carter Johnson, Arvid Boe, Vance Owens, David W. Archer, Malia Volke, Brett Werner, and Craig Novotny

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Biomass Yield From Planted Mixtures and Monocultures of Native Prairie Vegetation Across a Heterogeneous Farm Landscape, Cody J. Zilverberg, W. Carter Johnson, Vance Owens, Arvid Boe, Tom Schumacher, Kurtis Reitsma, Chang Oh Hong, Craig Novotny, Malia Volke, and Brett Warner

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Profitable Prairie Restoration: The EcoSun Prairie Farm Experiment, Cody Zilverberg, W. Carter Johnson, David Archer, Scott Kronberg, Thomas Schumacher, Arvid A. Boe, and Craig Novotny

Submissions from 2013

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Summary of Certified Crop Advisors’ Response to a Weed Resistance Survey, Amy Asmus, Sharon A. Clay, and Cuirong Ren

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Seed Set in Prairie Cordgrass, Arvid Boe, Vance Owens, Jose Gonzalez-Hernandez, and D. K. Lee

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Nitrate Sorption and Desorption in Biochars from Fast Pyrolysis, Rajesh Chintala, Javier Mollinedo, Thomas E. Schumacher, Sharon K. Papiernik, Douglas D. Malo, David E. Clay, Sandeep Kumar, and Dylan W. Gulbrandson

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ASA President’s Message: ASA Approves a Five-Year Strategic Plan, Sharon Clay

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ASA President’s Message: ASA: [Re]investing in Your Dreams, Sharon Clay

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ASA President’s Message: Big Shoes . . . Little Feet, Sharon Clay

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ASA President’s Message: Do YOU Have a Dream?, Sharon Clay

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ASA President’s Message: Having a Seat at the Table: The Importance of Having a Washington, DC Presence, Sharon Clay

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ASA President’s Message: Take a Couple of Communities for a ‘Test Drive’, Sharon Clay

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ASA President’s Message: Thank You for a Memorable Year, Sharon Clay

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ASA President’s Message: Wanted: Community Input for ASA Strategic Planning, Sharon Clay

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ASA President’s Message: Wanted: Scientific Community Analysis, Sharon Clay

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ASA President’s Message: Water, Water Everywhere, Sharon Clay

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Society Presidents Go to Washington, Sharon Clay, Mark Brick, and David Lindbro

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Seed Burial Physical Environment Explains Departures from Regional Hydrothermal Model of Giant Ragweed (Ambrosia trifida) Seedling Emergence in U.S. Midwest, Adam S. Davis, Sharon Clay, John Cardina, Frank Forcella, John Lundquist, and Christy Sprague

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Landscape Features Impact on Soil Available Water, Corn Biomass, and Gene Expression during the Late Vegetative Stage, Stephanie Hansen, Sharon A. Clay, David E. Clay, C. Gregg Carlson, Graig Reicks, Youssef Jarachi, and David Horvath

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Testing Corn (Zea mays L.) Preseason Regional Nitrogen Recommendation Models in South Dakota, Kin-In Kim, David Clay, Sharon Clay, Gregg C. Carlson, and Todd Trooien

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Insect communities in soybeans of eastern South Dakota: The effects of vegetation management and pesticides on soybean aphids, bean leaf beetles, and their natural enemies, Jonathan G. Lundgren, Louis S. Hesler, Sharon A. Clay, and Scott F. Fausti

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Using a Pervasive Invader for Weed Science Education, Michelle K. Ohrtman and Sharon A. Clay

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Spring Clipping, Fire, and Simulated Increased Atmospheric Nitrogen Deposition Effects on Tallgrass Prairie Vegetation, Alexander J. Smart, Tabitha K. Scott, Sharon A. Clay, David E. Clay, Michelle K. Ohrtman, and Eric M. Mousel

Submissions from 2012

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Great Plains Soils May be C Sinks, David E. Clay, Gregg C. Carlson, Sharon A. Clay, James Stone, Kurtis Reitsma, and Ronald Gelderman

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Corn Yields and No-Tillage Affects Carbon Sequestration and Carbon Footprints, David E. Clay, Jiyul Chang, Sharon A. Clay, James J. Stone, Ronald H. Gelderman, Gregg C. Carlson, Kurtis Reitsma, Marcus Jones, Larry Janssen, and Thomas Schumacher

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Winter Wheat Crop Reflectance and Nitrogen Sufficiency Index Values are Influenced by Nitrogen and Water Stress, David E. Clay, Tulsi Prasad Kharel, Cheryl Reese, Dwayne Beck, C. Gregg Carlson, Sharon A. Clay, and Graig Reicks