This collection houses articles and publications generated by the faculty of the Department of Agronomy, Horticulture and Plant Science
Submissions from 2019
Management Considerations for Palmer Amaranth in a Northern Great Plains Soybean Production System, Brian Vab De Stroet and Sharon Clay
It is Time to Apply Biclustering: a Comprehensive Review of Biclustering Applications in Biological and Biomedical Data, Juan Xie, Anjun Ma, Anne Fennell, Qin Ma, and Jing Zhao
Submissions from 2018
Bacterial blight of lentil (Lens culinaris) caused by Pseudomonas syringae pv. syringae, A. D. Adhikari, K. A. Nielsen, R. M. Harveson, C. Graham, R. Beck, and F. Mathew
Spatial Characterization of Soybean Yield and Quality (Amino Acids, Oil, and Protein) for United States, Y. Assefa, N. Bajjalieh, S. Archontoulis, S. Casteel, D. Davidson, Peter Kovacs, S. Naeve, and Ignacio A. Ciampitti
Seed Set and Seed-Insect Interactions in Natural and Cultivated Populations of Purple Prairie Clover, Arvid Boe, Paul J. Johnson, and Abigail P. Martens
Using Abrasive Grit for Weed Management in Field Crops, Michael Carlson, Frank Forcella, Sam Wortman, and Sharon A. Clay
30 Years of Progress toward Increased Biomass Yield of Switchgrass and Big Bluestem, M. D. Casler, K. P. Vogel, D. K. Lee, R. B. Mitchell, P. R. Adler, R. M. Suic, K. D. Johnson, R. L. Kallenbach, A. R. Boe, R. D. Mathison, K. A. Cassida, D. H. Min, J. Crawford, and K. J. Moore
Effectiveness of Split Nitrogen Applications in the Midwestern U.S., Jason Clark and Fabian Fernandez
Pest measurement and management, Sharon A. Clay, B.W. French, and F.M. Mathew
VitisGen Discoveries in Local and Centralized Trait Evaluation, E. M. Demmings, L. Cadle-Davidson, G. Sacks, Anne Fennell Dr, and Et al.
Propelled Abrasive Grit for Weed Control in Organic Silage Corn, Mauricio Erazo-Barradas, Fran Forcella, and Dan Humburg
Knowledge, Skills, and Abilities in the Precision Agriculture Workforce: An Industry Survey, Bruce Erickson, Scott W. Fausti, David Clay, and Sharon Clay
Educator Survey: Do Institutions Provide the Precision Agriculture Education Needed by Agribusiness?, Scott Fausti, Bruce Erickson, Sharon Clay, Leon Schumacher, David Clay, and Danille Skouby
Air-propelled Abrasive Grit can Damage the Perennial Weed Quackgrass, Frank Forcella, Daniel Humburg, Samuel E. Wortman, and Sharon A. Clay
Shotgun Proteomic Analysis of Photoperiod Regulated Dormancy Induction in Grapevine, Iniga S. George, Anne Y. Fennell, and Paul A. Haynes
Sunflower Stalk Diseases Initiated Through Leaf Infections, R. Harveson, F. Mathew, T. Gulya, S. Markell, C. Block, and S. Thompson
Above- and Belowground Prairie Cordgrass Response to Applied Nitrogen on Marginal Land, Karla A. Hernandez, Vance Owens, Arvid Boe, Jose L. Gonzalez-Hernandez, Dokyoung Lee, and Ezra Aberle
Weed Presence Altered Biotic Stress and Light Signaling in Maize Even When Weeds were Removed Early in the Critical Weed‐free Period, David P. Horvath, Stephanie Bruggeman, Janet Moriles-Miller, James V. Anderson, Munevver Dogramaci, Brian E. Scheffler, Alvaro G. Hernandez, Michael E. Foley, and Sharon Clay
Benefits and Profitability of Fluopyram-Amended Seed Treatments for Suppressing Sudden Death Syndrome and Protecting Soybean Yield: A Meta-Analysis, Yuba R. Kendel, Michael T. McCarville, Eric A. Adee, Jason P. Bond, Martin I. Chilvers, Shawn P. Conley, Loren J. Giesler, Heather M. Kelly, Dean K. Malvick, Febina M. Mathew, John C. Rupe, Laura E. Sweets, Albert U. Tenuta, Kiersten A. Wise, and Daren S. Mueller
Do Precision Chemical Amendment Applications Impact Sodium Movement in Dryland Semiarid Saline Sodic Soils?, Tulsi P. Kharel, David E. Clay, Cheryl Reese, Thomas DeSutter, Doug D. Malo, and Sharon Clay
Phomopsis Stem Canker of Sunflower, Febina Mathew, Robert Harveson, Thomas Gulya, Susan Thompson, Charles Block, and Samuel Markell
First Report of Stem Disease of Soybean (Glycine max) Caused by Diaporthe gulyae in North Dakota, F. M. Mathew, T. J. Gulya, J. G. Jordahl, and S. G. Markell
Comparison of Greenhouse-Based Inoculation Methods to Study Aggressiveness of Diaporthe helianthi Isolates Causing Phomopsis Stem Canker of Sunflower (Helianthus annuus), F. M. Mathew, J. G. Jordahl, T. J. Gulya, and S. G. Markell
Identification of Sunflower (Helianthus annuus) Accessions Resistant to Diaporthe helianthi and Diaporthe gulyae, F. M. Mathew, T. R. Olson, L. F. Marek, T. J. Gulya, and S. G. Markell
Evolutionary Divergence of TNL Disease-Resistant Proteins in Soybean (Glycine max) and Common Bean (Phaseolus vulgaris), Surendra Neupane, Qin Ma, Febina M. Mathew, Adam J. Varenhorst, Ethan J. Andersen, and Madhav P. Nepal
Root Rot Caused by Species of Fusarium on Brassica carinata in South Dakota, P. N. Okello, K. Petrovic, B. Kontz, A. Ali, L. F. Marek, and F. M. Mathew
Comparison of Three Assembly Strategies for a Heterozygous Seedless Grapevine Genome Assembly, Sagar Patal, Zhixiu Lu, Xiaozhu Jin, Padmapriya Swaminathan, Erliang Zeng, and Anne Y. Fennell Dr
Mob vs. Rotational Grazing: Impact on Forage Use and Artemisia absinthium, Heidi Reed, Alexander Smart, David E. Clay, Michelle Ohrtman, and Sharon A. Clay
Evaluation of Tannins and Anthocyanins in Marquette, Frontenac, and St. Croix Cold-Hardy Grape Cultivars, Somchai Rice, Jacek A. Koziel, Murlidhar Dharmadhikari, and Anne Fennell
Determination of Selected Aromas in Marquette and Frontenac Wine Using Headspace-SPME Coupled with GC-MS and Simultaneous Olfactometry, Somchai Rice, Nanticha Lutt, Jacek A. Koziel, Murlidhar Dharmadhikari, and Anne Fennell Dr
Transcriptome Analysis of the Heritable Salt Tolerance of Prairie Cordgrass (Spartina pectinata Link), Michael Robben, Ethan Thibault, Michaellong Tran, Yajun Wu, Arvid Boe, and Jose L. Gonzalez-Hernandez
Profitability of Abrasive Weeding in Organic Grain and Vegetable Crops, Sam E. Wortman, Frank Forcella, David Lambe, Sharon A. Clay, and Daniel Humberg
Submissions from 2017
Evaluating Adaptions of Soft Red Winter Wheat in Eastern Region of USA, Dilmini Alahakoon, Anne Fennell, and Jixiang Wu
Evaluation of Weed Species as Alternative Hosts of Soybean Cyst Nematode in South Dakota, Pawan Basnet, Emmanuel Byamukama, and Sharon Clay
Genetics and Partitioning for Biomass of Prairie Cordgrass Compared to Switchgrass on Marginal Cropland, Arvid Boe, P. J. Johnson, Vance Owens, Jia Guo, and Jose L. Gonzalez-hernandez
Mathematics Associated with Seed Emergence, Plant Population, Stand Uniformity, and Harvest Losses, Stephanie A. Bruggeman, Sharon A. Clay, Cheryl L. Reese, and C. Gregg Carlson
Introduction to Conceptual Models, Calculating and Using Rate Constants, Economics, and Problem Solving, Gregg Carlson, David E. Clay, and Sharon A. Clay
Biomass Yield of Switchgrass Cultivars under High- versus Low-Input Conditions, Michael D. Casler, Sergio Sosa, Lindsey Hoffman, Hilary Mayton, Calvin Ernst, Paul R. Adler, Arvid R. Boe, and Stacy A. Bonos
A Rapid Method for Measuring Feces Ammonia-Nitrogen and Carbon Dioxide-Carbon Emissions and Decomposition Rate Constants, Jiyul Chang, David E. Clay, Sharon A. Clay, and Michelle K. Ohrtman
Calculating Soil Organic Turnover at Different Landscape Position in Precision Conservation, David E. Clay, Jiyul Chang, Graig Reicks, Sharon A. Clay, and Cheryl L. Reese
From Plows, Horses, and Harnesses to Precision Technologies in the North American Great Plains, David E. Clay, Sharon A. Clay, Thomas DeSutter, and Cheryl Reese
An Introduction to Experimental Design and Models, David Clay, Gary Hatfield, and Sharon A. Clay
Site-specific Weed Management, Sharon A. Clay and Stephanie A. Bruggeman
Estimating Weed and Insect Development, In-Season Yield Losses, and Economic Thresholds, Sharon A. Clay and Adam Varenhorst
First Report of Alternaria Black Spot caused by Alternaria alternata on Brassica carinata in South Dakota, M. Dunbar, A. Adhikari, B. Kontz, A. Varenhorst, T. Nlleya, E. Byamukama, and F. Mathew
Propelled Abrasive Grit Applications for Weed Management in Transitional Corn Grain Production, Mauricio Enzo-Barradas, Claire N. Friedrichsen, Frank Forcella, Dan Humberg, and Sharon A. Clay
Growth and Development of Two Perennial Grasses in Ambient Light Conditions during their Natural Dormant Period, Jia Guo, Arvid Boe, Do-Soon Kim, and D. K. Lee
Biomass Yield and Feedstock Quality of Prairie Cordgrass in Response to Seeding Rate, Row Spacing, and Nitrogen Fertilization, Jia Guo, Santanu Thapa, Thomas Voigt, Vance Owens, Arvid Boe, and D. K. Lee
A Public–Industry Partnership for Enhancing Corn Nitrogen Research and Datasets: Project Description, Methodology, and Outcomes, Newell R. Kitchen, John F. Shanahan, Curtis J. Ransom, Christopher J. Bandura, Gregory M. Bean, James J. Camberato, Paul R. Carter, Jason D. Clark, Richard B. Ferguson, Fabian G. Fernandez, David W. Franzen, Carrie A.M. Laboski, Emerson D. Nafziger, Zhisheng Qing, John E. Sawyer, and Matt Shafer
Relationships Between Ear-Leaf Nutrient Concentrations at Silking and Corn Biomass and Grain Yields at Maturity, Peter Kovacs and Tony J. Vyn
Enhanced Atrazine Degradation is Widespread Across the United States, Thomas C. Mueller, Ethan T. Parker, Larry Steckel, Sharon A. Clay, Michael DK Owen, William S. Curran, Randall Currie, Robert Scott, Christy Sprague, Daniel O. Stephenson, Donnie K. Miller, Eric P. Prostko, W. James Grichar, James Martin, L. Jason Kruz, Kevin Bradley, Mark L. Bernards, Peter Dotray, Stevan Knezevic, Vince Davis, and Robert Klein
First Report of Diaporthe stewartii Causing Phomopsis Stem Canker of Sunflower (Helianthus annuus) in Minnesota, T. R. Olson, B. Krontz, S. G. Markell, T. J. Gulya, and F. M. Mathew
Nutrient Partitioning and Stoichiometry in Soybean: A Synthesis-Analysis, S. Tamagno, G. R. Balboa, Y. Assefa, Peter Kovacs, S. N. Casteel, F. Salvagiotti, F. O. Garcia, W. M. Stewart, and I. A. Ciampitti
QUBIC: A Bioconductor Package for Qualitative Biclustering Analysis of Gene co-Expression Data, Yu Zhang, Juan Xie, JInyu Yang, Anne Fennell Dr, Chi Zhang, and Qin Ma
Submissions from 2016
Towards an Open Grapevine Information System, A-F Adam-Blondon, M. Alaux, C. Pommier, D. Cantu, Z-M Cheng, GR Cramer, C. Davies, S. Delrot, L. Deluc, G. Di Gaspero, J. Grimplet, A. Fennell Dr, and Et. al
Corn Yield Loss Due to Volunteer Soybean, Jill Alms, Sharon A. Clay, David Vos, and Michael Moechnig
Yield Loss and Management of Volunteer Corn in Soybean, Jill Alms, Michael Moechnig, David Vos, and Sharon Clay
Physiological and Molecular Characterisation of Lucerne (Medicago sativa L.) Germplasm with Improved Seedling Freezing Tolerance, M. Rokebul Anowar, Anne Fennell, Arvid Boe, Ivan W. Mott, Michael D. Peel, and Yajun Wu
First Detection of Aster Yellows Associated With Phytoplasma on Camelina sativa in South Dakota, E. Byamukama, C. Tande, J. Olson, L. Hesler, K. Grady, T. Nleya, and Febina Mathew
Biochar Reduced Nitrous Oxide and Carbon Dioxide Emissions from Soil with Different Water and Temperature Cycles, Jiyul Chang, David E. Clay, Sharon A. Clay, Rajesh Chintala, Janet M. Miller, and Thomas Schumacher
Estimating Annual Root Decomposition in Grassland Systems, Jiyul Chang, David E. Clay, Alexander Smart, and Sharon A. Clay
Maize, Switchgrass, and Ponderosa Pine Biochar Added to Soil Increased Herbicide Sorption and Decreased Herbicide Efficacy, Sharon A. Clay, Kaitlynn K. Krack, Stephanie A. Bruggeman, Sharon Papiernik, and Thomas E. Schumacher
Toward the Elucidation of Cytoplasmic Diversity in North American Grape Breeding Programs, Jonathan Fresnedo-Ramirez, Qi Sun, Chin-Feng Hwang, Craig A. Ledbetter, David W. Ramming, Anne Fennell, M. Andrew Walker, James J. Luby, Matthew D. Clark, Jason P. Londo, lance Cadle-Davidson, and Gan-Yuan Zhong
Understanding and Identifying Variability, Newell R. Kitchen and Sharon A. Clay
Optimization and Application of a Quantitative Polymerase Chain Reaction Assay to Detect Diaporthe Species in Soybean Plant Tissue, Brian Kontz, Sajag Adhikari, Senthil Subramanian, and Febina M. Mathew
An Integrative and Applicable Phylogenetic Footprinting Framework for cis-regulatory Motifs Identification in Prokaryotic Genomes, Bingqiang Liu, Hanyuan Zhang, Chaun Zhou, Guojaun Li, Anne Fennell, Guanghui Wang, Yu Kang, and Qi Liu
Next Generation Mapping of Enological Traits in an F2 Interspecific Grapevine Hybrid Family, Shanshan Yang, Jonathan Fresnedo-Ramírez, Qi Sun, David C. Manns, Gavin L. Sacks, Anna Katherine Mansfield, James L. Luby, Jason Londo, Bruce I. Reisch, lance Cadle-Davidson, and Anne Y. Fennell
A Next-generation Marker Genotyping Platform (AmpSeq) in Heterozygous Crops: A Case Study for Marker-assisted Selection in Grapevine, SHanshan Yang, Jonathan Fresnedo-Ramírez, Minghui Wang, Linda Cote, Peter Schweitzer, Paola Barba, Elizabeth M. Takacs, Matthew Clark, James Luby, David C. Manns, Gavin Sacks, Anna Katharine Mansfield, Jason Londo, Anne Fennell Dr, David Gadoury, Bruce Reisch, Lance Cadle-Davidson, and Qi Sun
Strategic Use of Native Species on Environmental Gradients Increases Diversity and Biomass Relative to Switchgrass Monocultures, Cody J. Zilverberg, Kwan Teoh, Arvid Boe, W. Carter Johnson, and Vance Owens
Submissions from 2015
Differential Response of Teosinte and Flint, Sweet, Dent Corn Varieties to Weed Competition, S. A. Bruggeman, S. A. Clay, D. A. Horvath, and S. Flint-Garcia
Identification and Characterization of Fusarium spp. Associated with Root Rots of Field Pea in North Dakota, Kishore Chittem, Febina Mathew, Matthew Gregoire, Ropbin S. Lamppa, Yen Wei Chang, Samuel G. Markell, Carl A. Bradley, Tharcisse Barasubiye, and Rubella S. Goswami
Tillage and Corn Residue Harvesting Impact Surface and Subsurface Carbon Sequestration, David E. Clay, Graig Reicks, Janet Moriles Miller, C. Gregg Carlson, James. J. Stone, and Sharon Clay
Pliable Plants, Sharon Clay
Short Day Transcriptomic Programming During Induction of Dormancy in Grapevine, Anne Fennell, Karen A. Schlauch, Satyanarayana Gouthu, Laurent G. Deluc, Vedbar Khadka, Lekha Sreekantan, Jerome Grimplet, Grant C. Cramer, and Katherine L. Mathiason
Protein Identification and Quantification from Riverbank Grape, Vitis riparia: Comparing SDS‐PAGE and FASP‐GPF Techniques for Shotgun Proteomic Analysis, Ingra S. George, Anne Y. Fennell, and Paul A. Haynes
Phenotypic and Biomass Yield Variations in Natural Populations of Prairie Cordgrass (Spartina pectinata Link) in the USA, Jia Guo, Santanu Thapa, Thomas Voigt, A. Lane Rayburn, Arvid Boe, and D. K. Lee
First report of an Orobanche ludoviciana Parasitizing Sunflowers, Robert M. Harveson, Allen Nelson, Febina M. Mathew, and Gerald J. Seiler
RNAseq reveals weed-induced PIF3-like as a Candidate Target to Manipulate Weed Stress Response in Soybean, David P. Horvath, Stephanie A. Bruggeman, Janet Moriles Miller, Ronald Pierik, Chanhui Yan, David E. Clay, Brian Scheffler, and Sharon A. Clay
An Economic Analysis of High-Intensity, Short-duration Grazing Systems in South Dakota and Nebraska, Larry Janssen, Bronc McMurtry, Matthew Stockton, Alexander Smart, and Sharon A. Clay
Anhydrous Ammonia Timing and Rate Effects on Maize Nitrogen Use Efficiencies, Peter Kovacs, George E. Van Scoyoc, Thomas A. Doerge, James J. Camberato, and Tony J. Vyn
Identification of Diaporthe longicolla on Dry Edible Peas, Dry Edible Beans and Soybeans in North Dakota, Febina Mathew, Lisa A. Castlebury, Kholoud Alananbeh, James G. Jordahl, Chris A. Taylor, Scott M. Meyer, Robin S. Lamppa, Julie A. pasche, and Samuel G. Markell
Phomopsis Stem Canker: A Reemerging Threat to Sunflower (Helianthus annuus) in the United States, Febina M. Mathew, Kholoud M. Alananbeh, James G. Jordahl, Scott M. Meyer, Lisa A. Castlebury, Thomas J. Gulya, and Samuel G. Markell
Rhizopus oryzae Associated with Melanagromyza splendida and Stem Disease of Sunflowers (Helianthus annuus) in California, Febina M. Mathew, Jarrad R. Prasifka, Stephen D. Galmari, Li Shi, Samuel G. Markell, and Thomas J. Gulya
First Report of Phomopsis Stem Canker of Sunflower (Helianthus annuus) Caused by Diaporthe gulyae in Canada, Febina Mathew, K. Y. Rashid, T. J. Gulya, and S. G. Markell
First Report of Brown Stem Rot of Soybean (Glycine max) Caused by Phialophora gregata in South Dakota, Febina Mathew, C. Tande, A. Gebreil, E. Byamukama, L. Osborne, and M. Draper
Surface Temperatures and Durations Associated with Spring Prescribed Fires in Eastern South Dakota Tallgrass Prairies, Michelle K. Ohrtman, Sharon A. Clay, and Alexander J. Smart
Association of Diaporthe longicolla with Black Zone Lines on Mature Soybean Plants, Taylor R. Olson, Ahmed Gebreil, Ana Micijevic, Carl A. Bradley, Kiersten A. Wise, Daren S. Mueller, Martin I. Chilvers, and Febina Mathew
Tillage and Nitrogen Rate Effects on Area- and Yield-Scaled Nitrous Oxide Emissions From Pre-Plant Anhydrous Ammonia, Rex A. Omonode, Peter Kovacs, and Tony J. Vyn
De novo Genome Assembly Tool Comparison for Highly Heterozygous Species Vitis vinifera cv. Sultanina, Sagar Patel, Padmapriya Swaminathan, Anne Fennell, and Erilang Zeng
Does the U.S. Cropland Data Layer Provide an Accurate Benchmark for Land-Use Change Estimates?, Kurtis D. Reitsma, David E. Clay, Sharon A. Clay, Barry H. Dunn, and C. Reese
Land-Use Change Impact on Soil Sustainability in a Climate and Vegetation Transition Zone, Kurtis D. Reitsma, Barry H. Dunn, Umakant Mishra, Sharon A. Clay, T. DeSutter, and David E. Clay
Differential Effects of Biochar on Soils Within an Eroded Field, Thomas E. Schumacher, Rajesh Chintala, Saroopp Sandhu, Sandeep Kumar, David Clay, Ron Gelderman, Sharon Papiernik, Douglas Malo, Sharon Clay, and Jim Julson
First Report of Charcoal Rot Caused by Macrophomina phaseolina on Brassica carinata in South Dakota, C. Tande, A. Gebreil, F. Mathew, and E. Byamukama
Submissions from 2014
Corn Yield Is Not Reduced by Mid-Season Establishment of Cover Crops in Northern Great Plains Environments, Alex D. Bich, Cheryl L. Reese, Ann C. Kennedy, David E. Clay, and Sharon A. Clay
Water Stress Impacts on Transgenic Drought-Tolerant Corn in the Northern Great Plains, Jiyul Chang, David E. Clay, Stephanie A. Hansen, Sharon A. Clay, and Thomas E. Schumacher
Phosphorus Sorption and Availability fromBiochars and Soil/Biochar Mixtures, Rajesh Chintala, Thomas E. Schumacher, Louis M. McDonald, David E. Clay, Douglas D. Malo, Sharon K. Papiemik, Sharon A. Clay, and James L. Julson
Does the Conversion of Grasslands to Row Crop Production in Semi-aridareas Threaten Global Food Supplies, David E. Clay, Sharon A. Clay, Kurtis D. Reitsma, Barry H. Dunn, Alexander J. Smart, Gregg G. Carlson, David Horvath, and James J. Stone
Know Your Community: Weedy and Invasive Species, Sharon Clay
Common Sunflower Seedling Emergence across the U.S. Midwest, Sharon A. Clay, Adam Davis, Anita Dille, John Lindquist, Analiza H. M. Ramirez, Christy Sprague, Graig Reicks, and Frank Forcella
DIGE substantially reduces protein spot variability caused by 2D-PAGE and increases detection of differentially expressed proteins., G.R. Cramer, L. G. Deluc, K. Spreeman, K. Schegg, and A. Fennell